scatrans.pl.gamma_shrinkage_plot

scatrans.pl.gamma_shrinkage_plot(results_df, *, x_col='total_us_counts', save_path=None, title='Empirical Bayes gamma shrinkage', figsize=(7, 5), dpi=300, ax=None, show=True, use_style=False)

Visualize per-gene shrinkage strength vs expression depth (empirical Bayes gamma).

Requires gamma_shrinkage_weight in the results table (produced when gamma_method='empirical_bayes'). Optionally colors by effective_gamma when present.

Return type:

(fig, ax)

Parameters:

• x_col (str)

• title (str)

• dpi (int)

• show (bool)

• use_style (bool)